Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BkdBBranched-chain alpha-keto acid dehydrogenase subunit E2. (396 aa)    
Predicted Functional Partners:
PdhB
Pyruvate dehydrogenase E1 component beta subunit pdhB.
 
 0.999
PdhA
Pyruvate dehydrogenase E1 component alpha subunit pdhA.
 
 0.999
AcoB
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit.
 
 0.999
Lpd
Dihydrolipoamide dehydrogenase.
 0.994
RMCT_0922
acyl-CoA dehydrogenase fadE19.
  
 0.981
Pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
 
 0.958
AccD5_1
propionyl-CoA carboxylase beta subunit 5 accD5.
  
 
 0.948
AccD6
propionyl-CoA carboxylase beta subunit 6 accD6.
  
 
 0.948
MmsA
Methylmalonate-semialdehyde dehydrogenase.
  
 
 0.947
Kgd
Alpha-ketoglutarate decarboxylase.
 
0.946
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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