Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_0973Nucleic acid-binding protein. (399 aa)    
Predicted Functional Partners:
PcaF_1
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.855
RMCT_0975
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.706
Frc_10
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.697
YrbE4B_2
ABC-type transport system.
  
    0.667
RMCT_3980
Putative uncharacterized protein.
  
 
 0.663
MlaE_12
ABC-type transport system.
  
    0.661
RMCT_0969
Virulence factor Mce family protein.
       0.655
RMCT_0968
Virulence factor Mce family protein.
       0.652
RMCT_1932
Lipid-transfer protein.
  
 
 0.598
RMCT_0852
Lipid-transfer protein.
  
 
 0.597
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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