STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Frc_10L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (401 aa)    
Predicted Functional Partners:
RMCT_0975
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.816
Frc_18
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
  
     0.774
Frc_1
Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
  
     0.774
Frc_21
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
     0.773
RMCT_0973
Nucleic acid-binding protein.
       0.699
Oxc
Thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
 
 
 0.631
PcaF_1
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.628
RMCT_2254
acyl-CoA dehydrogenase.
 
 
  0.628
YrbE4B_2
ABC-type transport system.
       0.601
MlaE_12
ABC-type transport system.
       0.591
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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