Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1000Putative uncharacterized protein. (109 aa)    
Predicted Functional Partners:
BphA_1
Rieske (2Fe-2S) domain-containing protein.
       0.866
TfdA
Taurine catabolism dioxygenase TauD/TfdA.
       0.847
RMCT_0998
Carboxymuconolactone decarboxylase.
       0.750
RMCT_1006
Xaa-Pro dipeptidase.
      
0.682
HcaE_1
Rieske (2Fe-2S) domain-containing protein.
       0.682
Hmp_3
Ferredoxin.
       0.656
FabG_17
Short-chain dehydrogenase/reductase SDR.
       0.642
YusO_2
MarR family transcriptional regulator.
       0.533
RMCT_0997
Cytochrome P450.
       0.512
RMCT_0996
Ferredoxin 1.
       0.495
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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