Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HcaE_1Rieske (2Fe-2S) domain-containing protein. (428 aa)    
Predicted Functional Partners:
YusO_2
MarR family transcriptional regulator.
 
   
 0.879
RMCT_1006
Xaa-Pro dipeptidase.
       0.868
TfdA
Taurine catabolism dioxygenase TauD/TfdA.
 
     0.838
NfdA_3
Amidohydrolase.
 
   
 0.835
AntB
Beta subunit of hydroxylase component of benzoate 1,2-dioxygenase.
 
 
 0.740
RMCT_1257
Putative uncharacterized protein.
  
     0.734
RMCT_1258
Putative uncharacterized protein.
  
     0.728
FabG_17
Short-chain dehydrogenase/reductase SDR.
 
  
 0.724
RMCT_0990
Thioesterase.
 
   
 0.716
AndAd
Aromatic-ring-hydroxylating dioxygenase, beta subunit.
 
 
 0.700
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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