Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1012Virulence factor Mce. (494 aa)    
Predicted Functional Partners:
MlaE_14
ABC-type transport system.
 
 
 0.969
MlaE_13
ABC-type transport system.
 
 
 0.967
RMCT_1015
Virulence factor Mce family protein.
 
  
 0.963
RMCT_1013
Virulence factor Mce family protein.
 
  
 0.960
RMCT_1014
Virulence factor Mce.
 
  
 0.960
RMCT_1017
Virulence factor Mce family protein.
 
  
 0.960
RMCT_1016
Virulence factor Mce family protein.
 
  
 0.959
MlaE_9
Organic solvents resistance ABC transporter permease.
 
 
 0.883
YrbE4A
Organic solvents resistance ABC transporter permease.
 
 
 0.877
MlaE_3
ABC-type transport system.
 
 
 0.877
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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