Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1072Putative uncharacterized protein. (256 aa)    
Predicted Functional Partners:
RMCT_1077
Phosphoheptose isomerase.
 
     0.929
NfuA
Rieske (2Fe-2S) protein.
 
     0.890
RMCT_1082
Uncharacterized protein.
 
     0.883
HybD
Hydrogenase maturation protease.
 
     0.870
RMCT_1080
NHL repeat-containing protein.
 
     0.847
HypF
Hydrogenase maturation factor, HypF.
       0.817
HypD_1
Hydrogenase expression/formation protein HypD.
       0.798
RMCT_1071
Non-ribosomal peptide synthetase.
       0.784
RMCT_0731
Sedoheptulose 7-phosphate isomerase.
 
     0.779
RMCT_1085
Nickel-dependent hydrogenase large subunit.
 
     0.778
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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