Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1087Uncharacterized protein. (181 aa)    
Predicted Functional Partners:
HydA
NADH ubiquinone oxidoreductase, 20 kDa subunit.
   
 
 0.926
RMCT_1085
Nickel-dependent hydrogenase large subunit.
   
 
 0.857
RMCT_0721
Hydrogenase small subunit.
   
 
 0.850
NarB
Sulfite reductase (NADPH) subunit alpha.
  
 
 0.828
RMCT_0722
Hydrogen:quinone oxidoreductase.
   
 
 0.762
FccB
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
    0.530
BedA
NAD(FAD)-dependent dehydrogenase.
  
    0.530
RhaS_1
Transcriptional regulator.
       0.496
RMCT_1082
Uncharacterized protein.
       0.495
HypF
Hydrogenase maturation factor, HypF.
       0.455
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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