Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CwlH | LytC | RMCT_1508 | RMCT_1124 | Peptidoglycan binding domain-containing protein. | Hydrolase. | 0.841 |
| CwlH | RMCT_0052 | RMCT_1508 | RMCT_0052 | Peptidoglycan binding domain-containing protein. | N-acetylmuramoyl-L-alanine amidase. | 0.844 |
| CwlH | RipA | RMCT_1508 | RMCT_4356 | Peptidoglycan binding domain-containing protein. | NLP/P60 protein. | 0.497 |
| LytC | CwlH | RMCT_1124 | RMCT_1508 | Hydrolase. | Peptidoglycan binding domain-containing protein. | 0.841 |
| LytC | RMCT_0052 | RMCT_1124 | RMCT_0052 | Hydrolase. | N-acetylmuramoyl-L-alanine amidase. | 0.982 |
| LytC | RMCT_1502 | RMCT_1124 | RMCT_1502 | Hydrolase. | Putative uncharacterized protein. | 0.826 |
| LytC | RMCT_1677 | RMCT_1124 | RMCT_1677 | Hydrolase. | Chorismate mutase. | 0.734 |
| LytC | RMCT_2203 | RMCT_1124 | RMCT_2203 | Hydrolase. | Lipoprotein lprD. | 0.711 |
| LytC | RMCT_3894 | RMCT_1124 | RMCT_3894 | Hydrolase. | Gp101; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA. | 0.697 |
| LytC | RipA | RMCT_1124 | RMCT_4356 | Hydrolase. | NLP/P60 protein. | 0.809 |
| LytC | TrxA | RMCT_1124 | RMCT_1125 | Hydrolase. | Thioredoxin; Belongs to the thioredoxin family. | 0.785 |
| LytC | TrxB | RMCT_1124 | RMCT_1126 | Hydrolase. | Thioredoxin reductase. | 0.706 |
| LytC | murA | RMCT_1124 | RMCT_3128 | Hydrolase. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.792 |
| RMCT_0052 | CwlH | RMCT_0052 | RMCT_1508 | N-acetylmuramoyl-L-alanine amidase. | Peptidoglycan binding domain-containing protein. | 0.844 |
| RMCT_0052 | LytC | RMCT_0052 | RMCT_1124 | N-acetylmuramoyl-L-alanine amidase. | Hydrolase. | 0.982 |
| RMCT_0052 | RipA | RMCT_0052 | RMCT_4356 | N-acetylmuramoyl-L-alanine amidase. | NLP/P60 protein. | 0.721 |
| RMCT_1502 | LytC | RMCT_1502 | RMCT_1124 | Putative uncharacterized protein. | Hydrolase. | 0.826 |
| RMCT_1502 | RipA | RMCT_1502 | RMCT_4356 | Putative uncharacterized protein. | NLP/P60 protein. | 0.746 |
| RMCT_1677 | LytC | RMCT_1677 | RMCT_1124 | Chorismate mutase. | Hydrolase. | 0.734 |
| RMCT_1677 | RMCT_2203 | RMCT_1677 | RMCT_2203 | Chorismate mutase. | Lipoprotein lprD. | 0.745 |
page 1 of 2
