Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1131NUDIX hydrolase; Belongs to the Nudix hydrolase family. (300 aa)    
Predicted Functional Partners:
RMCT_1130
Hypothetical protein.
  
  
 0.920
MurJ
Transmembrane protein.
       0.868
RMCT_1127
Putative uncharacterized protein.
     
 0.674
Cca
poly(A) polymerase pcnA; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.642
RpoE_4
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
       0.617
RMCT_2848
DivIVA domain-containing protein.
 
    0.573
Crp
Cpr/FNR family transcriptional regulator.
 
  
 0.550
RMCT_1133
Hypothetical protein.
     
 0.523
LytC
Hydrolase.
 
   
 0.497
RMCT_1134
Hypothetical protein; Belongs to the UPF0301 (AlgH) family.
       0.473
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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