Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1150Protein of unknown function. (291 aa)    
Predicted Functional Partners:
RMCT_1480
Lipolytic enzyme, G-D-S-L.
 
 
 0.752
RMCT_2009
Putative uncharacterized protein.
  
     0.744
RMCT_0739
Membrane protein.
  
     0.736
RMCT_4016
Membrane protein.
  
     0.691
PcrA_1
ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
 
   0.665
RMCT_4297
Hypothetical protein.
  
     0.648
RMCT_1092
Putative uncharacterized protein.
  
     0.632
RMCT_0113
Protease.
 
   
 0.623
TetR_2
TetR family transcriptional regulator.
  
   
 0.616
RMCT_4667
Cutinase.
 
 
 0.609
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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