Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PbpDPenicillin-binding protein. (809 aa)    
Predicted Functional Partners:
RMCT_1153
Transmembrane protein.
  
    0.888
DivIVA
DivIVA domain protein.
   
 
 0.850
PenA
Penicillin-binding membrane protein pbpB.
 
 
 
 0.826
RMCT_1151
Hypothetical protein.
     
 0.766
FtsW_2
Cell division protein FtsW; Belongs to the SEDS family.
 
 
 
 0.733
PbpA_2
Penicillin-binding protein.
 
 
 
 0.723
RMCT_3508
Cell division initiation protein.
   
 
 0.695
PbpA_1
Penicillin-binding protein pbpA.
 
 
 
0.681
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
  
 0.659
DacB_4
D-alanyl-D-alanine carboxypeptidase.
     
 0.649
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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