Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1153Transmembrane protein. (572 aa)    
Predicted Functional Partners:
PbpD
Penicillin-binding protein.
  
    0.888
RMCT_1151
Hypothetical protein.
 
     0.771
PimE
Mannosyltransferase.
 
   
 0.735
RMCT_1665
Integral membrane protein.
 
     0.690
RMCT_3315
Conserved alanine, arginine and proline rich membrane protein.
  
     0.687
priA
Primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
     0.675
RMCT_3155
Integral membrane protein.
 
   
 0.659
RMCT_3898
Integral membrane protein.
 
   
 0.595
RMCT_4323
Hypothetical protein.
  
     0.588
RMCT_0117
Helicase/secretion CpaE-like protein.
  
     0.558
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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