Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CopA | RMCT_1219 | RMCT_1398 | RMCT_1219 | Heavy metal translocating P-type ATPase. | ArsR family transcriptional regulator. | 0.463 |
CopB | RMCT_1219 | RMCT_1228 | RMCT_1219 | Copper-translocating P-type ATPase. | ArsR family transcriptional regulator. | 0.463 |
DevR_2 | RMCT_1219 | RMCT_1457 | RMCT_1219 | Two component LuxR family transcriptional regulator. | ArsR family transcriptional regulator. | 0.637 |
MrpD | RMCT_1219 | RMCT_2697 | RMCT_1219 | Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit. | ArsR family transcriptional regulator. | 0.716 |
NreC_2 | RMCT_1219 | RMCT_0515 | RMCT_1219 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | ArsR family transcriptional regulator. | 0.424 |
PolX | RMCT_1219 | RMCT_1218 | RMCT_1219 | PHP family phosphohydrolase, histidinol phosphatase. | ArsR family transcriptional regulator. | 0.565 |
PolX | YchM | RMCT_1218 | RMCT_1220 | PHP family phosphohydrolase, histidinol phosphatase. | Sulfate permease. | 0.591 |
RMCT_1219 | CopA | RMCT_1219 | RMCT_1398 | ArsR family transcriptional regulator. | Heavy metal translocating P-type ATPase. | 0.463 |
RMCT_1219 | CopB | RMCT_1219 | RMCT_1228 | ArsR family transcriptional regulator. | Copper-translocating P-type ATPase. | 0.463 |
RMCT_1219 | DevR_2 | RMCT_1219 | RMCT_1457 | ArsR family transcriptional regulator. | Two component LuxR family transcriptional regulator. | 0.637 |
RMCT_1219 | MrpD | RMCT_1219 | RMCT_2697 | ArsR family transcriptional regulator. | Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit. | 0.716 |
RMCT_1219 | NreC_2 | RMCT_1219 | RMCT_0515 | ArsR family transcriptional regulator. | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | 0.424 |
RMCT_1219 | PolX | RMCT_1219 | RMCT_1218 | ArsR family transcriptional regulator. | PHP family phosphohydrolase, histidinol phosphatase. | 0.565 |
RMCT_1219 | RMCT_1221 | RMCT_1219 | RMCT_1221 | ArsR family transcriptional regulator. | Uncharacterized protein. | 0.464 |
RMCT_1219 | RMCT_4416 | RMCT_1219 | RMCT_4416 | ArsR family transcriptional regulator. | NUDIX hydrolase. | 0.514 |
RMCT_1219 | TetR_2 | RMCT_1219 | RMCT_3397 | ArsR family transcriptional regulator. | TetR family transcriptional regulator. | 0.490 |
RMCT_1219 | YchM | RMCT_1219 | RMCT_1220 | ArsR family transcriptional regulator. | Sulfate permease. | 0.926 |
RMCT_1221 | RMCT_1219 | RMCT_1221 | RMCT_1219 | Uncharacterized protein. | ArsR family transcriptional regulator. | 0.464 |
RMCT_1221 | YchM | RMCT_1221 | RMCT_1220 | Uncharacterized protein. | Sulfate permease. | 0.464 |
RMCT_4416 | RMCT_1219 | RMCT_4416 | RMCT_1219 | NUDIX hydrolase. | ArsR family transcriptional regulator. | 0.514 |
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