STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1234Phytoene dehydrogenase. (492 aa)    
Predicted Functional Partners:
CrtM
Phytoene synthase.
  
 0.984
UbiE_3
Ubiquinone/menaquinone biosynthesis methyltransferase.
 
  
 0.940
Pds
Isorenieratene synthase.
 
   
 0.860
IspB
Geranylgeranyl pyrophosphate synthetase idsA2; Belongs to the FPP/GGPP synthase family.
 
  
 0.775
KshA_1
Rieske (2Fe-2S) domain-containing protein.
 
   
 0.763
CrtYc
Lycopene cyclase, CrtYc.
 
   
 0.706
Hom
Homoserine dehydrogenase.
      
 0.693
clpX
ATP-dependent clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
     
 0.676
RMCT_4140
Lycopene cyclase CrtYd.
 
     0.674
BchI_1
Magnesium chelatase.
 
  
 0.665
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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