Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RMCT_1234Phytoene dehydrogenase. (492 aa)    
Predicted Functional Partners:
CrtM
Phytoene synthase.
  
 0.976
UbiE_3
Ubiquinone/menaquinone biosynthesis methyltransferase.
 
  
 0.929
Pds
Isorenieratene synthase.
 
   
 0.874
KshA_1
Rieske (2Fe-2S) domain-containing protein.
 
   
 0.720
IspB
Geranylgeranyl pyrophosphate synthetase idsA2; Belongs to the FPP/GGPP synthase family.
 
  
 0.709
CrtYc
Lycopene cyclase, CrtYc.
 
   
 0.684
BchI_1
Magnesium chelatase.
 
  
 0.675
RMCT_4140
Lycopene cyclase CrtYd.
 
   
 0.674
clpX
ATP-dependent clp protease ATP-binding subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
     
 0.626
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.596
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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