Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RutA_8Luciferase family protein. (306 aa)    
Predicted Functional Partners:
YdaD_2
Short-chain dehydrogenase/reductase SDR.
     
 0.548
RMCT_2213
F420-dependent oxidoreductase, MSMEG_4879 family.
  
     0.537
SsuC
Transporter.
 
  
 0.486
LimB_3
Limonene monooxygenase.
  
     0.483
LuxA_4
Luciferase family protein.
  
     0.456
SsuA
Putative uncharacterized protein.
  
  
 0.445
TfdA
Taurine catabolism dioxygenase TauD/TfdA.
 
  
 0.444
Fgd1_4
5,10-methylenetetrahydromethanopterin reductase.
  
   
 0.443
Azo1
NADPH-dependent FMN reductase.
  
 
 0.442
Azr
NADPH-dependent FMN reductase.
  
 
 0.442
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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