Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GsiC_3Oligopeptide-transport integral membrane protein ABC transporter oppB. (325 aa)    
Predicted Functional Partners:
OppC_2
Oligopeptide-transport integral membrane protein ABC transporter oppC.
 0.999
GsiA_3
Oligopeptide-transport ATP-binding protein ABC transporter oppD; Belongs to the ABC transporter superfamily.
 
 0.999
RMCT_1381
Periplasmic oligopeptide-binding lipoprotein oppA.
 
 0.999
DdpC
Dipeptide/oligopeptide/nickel ABC transporter permease.
 
 0.987
GsiA_1
ABC transporter-like protein; Belongs to the ABC transporter superfamily.
 
 
 0.985
MetN2
ABC transporter-like protein.
 
 
 0.948
OppC_1
Dipeptide/oligopeptide/nickel ABC transporter permease.
 
 
 0.946
RMCT_3730
Extracellular solute-binding protein.
 
 
 0.936
DppA
Extracellular solute-binding protein.
 
 0.914
AppA
Peptide ABC transporter periplasmic protein.
 
 
 0.841
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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