Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1401Transposase, IS4 family. (455 aa)    
Predicted Functional Partners:
RMCT_4711
Transposase IS4 family protein.
  
     0.757
RMCT_2880
Transposase, IS4 family protein.
  
     0.742
RMCT_4607
Transposase, IS4 family protein.
  
     0.707
RMCT_4622
Transposase for insertion sequence element.
 
     0.559
RMCT_1400
Alpha/beta hydrolase.
       0.472
RMCT_2882
IS1096, tnpA protein.
 
     0.453
RMCT_4530
Putative transposase.
  
     0.450
RMCT_4531
Transposase.
  
     0.447
RMCT_1999
Integrase family protein.
 
   
 0.439
RMCT_3348
Transposase, IS4 family.
 
     0.430
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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