Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_1440Pyridoxamine 5'-phosphate oxidase-like protein. (142 aa)    
Predicted Functional Partners:
RMCT_1441
Sulfatase family protein.
       0.773
RMCT_0001
Putative uncharacterized protein.
 
      0.770
RMCT_1443
Nitroreductase.
  
  
 0.683
RMCT_1442
Gluconolactonase.
       0.539
RMCT_1997
RecB family nuclease.
 
     0.535
RMCT_1191
Putative uncharacterized protein.
  
  
 0.529
RMCT_0701
ATP-grasp superfamily enzyme.
  
    0.520
RMCT_3213
Putative uncharacterized protein.
 
     0.489
RMCT_4303
Signal-transduction protein.
  
  
 0.484
FdxC
4Fe-4S ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
  
 0.480
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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