Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YbeZ_2phoH-like protein phoH2. (456 aa)    
Predicted Functional Partners:
DevS
GAF sensor signal transduction histidine kinase.
  
    0.609
DevR_2
Two component LuxR family transcriptional regulator.
       0.601
Acg
Putative uncharacterized protein.
       0.601
Rng
Ribonuclease E.
 
    0.598
Dus
Transcriptional regulator; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.565
RMCT_1460
Acyl-[acyl-carrier protein] desaturase desA2.
     
 0.554
RMCT_1476
Acyl CoA dehydrogenase.
   
  
 0.452
CaiA_1
acyl-CoA dehydrogenase.
   
  
 0.447
RMCT_2598
Transmembrane protein.
  
   
 0.435
RMCT_1454
Hypothetical protein.
  
    0.430
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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