STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1504CsbD family protein; Belongs to the UPF0337 (CsbD) family. (58 aa)    
Predicted Functional Partners:
RMCT_1064
Acetyltransferase.
  
  
 0.670
RMCT_4345
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
    0.625
OhrB
Peroxiredoxin, Ohr subfamily.
  
  
 0.597
RMCT_1067
Pyridoxamine 5'-phosphate oxidase-like protein.
  
    0.567
RMCT_2605
Pyridoxamine 5'-phosphate oxidase.
  
    0.567
RMCT_3081
PPOX class probable F420-dependent enzyme.
  
    0.567
arcA
Arginine deiminase arcA.
 
    0.519
NemR
TetR family transcriptional regulator.
     
 0.514
RMCT_4180
NAD-dependent epimerase/dehydratase.
 
    0.509
RMCT_1834
NAD-dependent epimerase/dehydratase.
 
    0.503
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.