Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_1585Protein of unknown function. (185 aa)    
Predicted Functional Partners:
carA
Carbamoyl phosphate synthase small subunit; Belongs to the CarA family.
      
 0.536
RMCT_0579
Hypothetical protein.
      
 0.532
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
      
 0.515
RMCT_1366
Putative uncharacterized protein.
  
  
 0.491
RMCT_0741
35 kDa alanine rich protein.
  
  
 0.482
RMCT_1188
Regulatory protein LuxR.
  
     0.476
RMCT_2733
Conserved membrane protein.
 
    0.473
RMCT_2142
Hypothetical protein.
  
     0.453
TetR_1
TetR family transcriptional regulator.
 
   
 0.423
RMCT_1171
NLP/P60.
 
     0.422
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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