Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1587MCE-family protein mce4B. (280 aa)    
Predicted Functional Partners:
LprN_1
MCE-family lipoprotein LprN.
 
 
 0.980
RMCT_1588
Virulence factor Mce family protein.
 
  
 0.973
RMCT_1589
Virulence factor Mce family protein.
 
 
 0.969
RMCT_1591
Virulence factor Mce family protein.
 
  
 0.954
Mce4A
MCE-family protein mce4A.
 
 
 0.926
RMCT_1911
MCE-family protein mce4D.
 
 
 0.918
LprN_2
MCE family lipoprotein LprN.
 
 
 0.916
MlaD
Virulence factor Mce family protein.
 
 
 0.892
RMCT_2055
Virulence factor Mce family protein.
 
 
 0.890
RMCT_1912
MCE-family protein mce4C.
 
  
 0.889
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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