Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SubB_5Ferredoxin. (64 aa)    
Predicted Functional Partners:
RMCT_1620
acyl-CoA dehydrogenase.
       0.782
CaiA_6
acyl-CoA dehydrogenase.
       0.782
YcdF_2
Dehydrogenase.
       0.528
FabG_28
Short chain dehydrogenase.
  
  
 0.495
Sdh_1
Short-chain type oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.481
RMCT_1929
Acetoacetate decarboxylase (ADC) family protein.
 
     0.477
RMCT_1139
Short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.475
FrdB
Fumarate reductase iron-sulfur subunit.
 
   
 0.414
RMCT_1882
Cytochrome P450 51.
 
  
 0.408
RMCT_1884
Hypothetical protein.
 
  
 0.402
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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