Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1714Predicted protein. (69 aa)    
Predicted Functional Partners:
ClpC_1
Clp N terminal domain-containing protein.
 
   
 0.903
RMCT_1712
Amidohydrolase.
       0.661
RMCT_2726
ABC transporter transmembrane protein.
  
   
 0.573
RMCT_1715
Aldehyde dehydrogenase.
       0.563
FadE34
acyl-CoA dehydrogenase domain protein.
 
     0.513
RMCT_1722
acyl-CoA dehydrogenase FadE17_2.
 
     0.506
RMCT_1711
Glyoxalase/bleomycin resistance protein/dioxygenase.
       0.504
Oxc
Thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
       0.457
FadE18_2
acyl-CoA dehydrogenase.
       0.431
EchA8_29
enoyl-CoA hydratase/isomerase.
       0.431
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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