Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YcdF_3Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein. (304 aa)    
Predicted Functional Partners:
RMCT_1724
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.959
Oxc
Thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
 
 0.950
RMCT_1721
acyl-CoA dehydrogenase.
 
  0.909
BnzA
Rieske (2Fe-2S) domain-containing protein.
 
  
 0.904
PknD
SMP-30/gluconolaconase/LRE domain-containing protein.
 
  
 0.901
RMCT_1722
acyl-CoA dehydrogenase FadE17_2.
 
  0.888
EchA8_29
enoyl-CoA hydratase/isomerase.
 
 0.887
FadE34
acyl-CoA dehydrogenase domain protein.
 
  0.878
FadE18_2
acyl-CoA dehydrogenase.
 
  0.873
PamO_4
Cyclododecanone monooxygenase.
 
 
 0.850
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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