Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PhnFTranscriptional regulatory protein. (245 aa)    
Predicted Functional Partners:
PknD
SMP-30/gluconolaconase/LRE domain-containing protein.
     
 0.875
FadK_14
acyl-CoA synthetase.
 
     0.735
RMCT_1732
Short-chain dehydrogenase.
 
     0.733
LutR
GntR family transcriptional regulator.
 
  
 0.721
YcdF_3
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein.
       0.719
FadD_17
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.692
PdhR_7
GntR family transcriptional regulator.
 
  
 0.672
PdhR_2
Transcriptional regulator.
 
  
 0.659
BnzA
Rieske (2Fe-2S) domain-containing protein.
 
   
 0.656
RMCT_1724
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.639
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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