Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RMCT_1732Short-chain dehydrogenase. (261 aa)    
Predicted Functional Partners:
FadK_14
acyl-CoA synthetase.
 
 
 0.914
FadD_17
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.892
PknD
SMP-30/gluconolaconase/LRE domain-containing protein.
 
  
 0.784
BdhA_2
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.779
PhnF
Transcriptional regulatory protein.
 
     0.733
YcdF_4
Short-chain dehydrogenase/reductase SDR.
  
     0.727
Lvr_5
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.711
KasA_2
Fatty acid synthase.
  
 0.707
RMCT_1724
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    
0.690
YcdF_3
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein.
 
   
0.685
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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