Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EstB_4Penicillin-binding protein, beta-lactamase class C. (528 aa)    
Predicted Functional Partners:
CtpF_2
Metal cation transporter P-type ATPase ctpE.
  
  
 0.917
RMCT_1735
Polyketide cyclase / dehydrase and lipid transport.
       0.698
RMCT_1739
Conserved exported protein of unknown function.
     
 0.648
RMCT_1736
Putative uncharacterized protein.
 
     0.612
EchA6
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.469
EstB_2
Beta-lactamase.
 
   
0.455
YbbD
Beta-glucosidase-like glycosyl hydrolase.
 
  
 0.448
RMCT_1741
Amylo-alpha-1,6-glucosidase.
       0.438
RMCT_1041
Transposase.
 
     0.437
FadD_17
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
     
 0.433
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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