Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AcoB | Kgd | RMCT_1637 | RMCT_2818 | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit. | Alpha-ketoglutarate decarboxylase. | 0.999 |
AcoB | PrrB | RMCT_1637 | RMCT_1750 | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit. | Two component system sensor histidine kinase prrB. | 0.871 |
AcoB | RMCT_4559 | RMCT_1637 | RMCT_4559 | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit. | Stage II sporulation protein E. | 0.898 |
AcoB | prs | RMCT_1637 | RMCT_1532 | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.984 |
CopR | PrrB | RMCT_4151 | RMCT_1750 | Two-component system response regulator. | Two component system sensor histidine kinase prrB. | 0.815 |
CopR | RMCT_4559 | RMCT_4151 | RMCT_4559 | Two-component system response regulator. | Stage II sporulation protein E. | 0.893 |
Kgd | AcoB | RMCT_2818 | RMCT_1637 | Alpha-ketoglutarate decarboxylase. | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit. | 0.999 |
Kgd | PrrB | RMCT_2818 | RMCT_1750 | Alpha-ketoglutarate decarboxylase. | Two component system sensor histidine kinase prrB. | 0.746 |
Kgd | RMCT_4559 | RMCT_2818 | RMCT_4559 | Alpha-ketoglutarate decarboxylase. | Stage II sporulation protein E. | 0.820 |
Kgd | prs | RMCT_2818 | RMCT_1532 | Alpha-ketoglutarate decarboxylase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.986 |
MprA | PrrB | RMCT_1582 | RMCT_1750 | Two component response transcriptional regulatory protein MprA. | Two component system sensor histidine kinase prrB. | 0.901 |
MprA | RMCT_4559 | RMCT_1582 | RMCT_4559 | Two component response transcriptional regulatory protein MprA. | Stage II sporulation protein E. | 0.893 |
MtrA | PrrB | RMCT_2310 | RMCT_1750 | Two component system sensor transduction transcriptional regulatory protein mtrA. | Two component system sensor histidine kinase prrB. | 0.946 |
MtrA | RMCT_4559 | RMCT_2310 | RMCT_4559 | Two component system sensor transduction transcriptional regulatory protein mtrA. | Stage II sporulation protein E. | 0.893 |
PrrA | PrrB | RMCT_1749 | RMCT_1750 | Two component transcriptional regulator. | Two component system sensor histidine kinase prrB. | 0.999 |
PrrA | RMCT_4559 | RMCT_1749 | RMCT_4559 | Two component transcriptional regulator. | Stage II sporulation protein E. | 0.893 |
PrrB | AcoB | RMCT_1750 | RMCT_1637 | Two component system sensor histidine kinase prrB. | Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit. | 0.871 |
PrrB | CopR | RMCT_1750 | RMCT_4151 | Two component system sensor histidine kinase prrB. | Two-component system response regulator. | 0.815 |
PrrB | Kgd | RMCT_1750 | RMCT_2818 | Two component system sensor histidine kinase prrB. | Alpha-ketoglutarate decarboxylase. | 0.746 |
PrrB | MprA | RMCT_1750 | RMCT_1582 | Two component system sensor histidine kinase prrB. | Two component response transcriptional regulatory protein MprA. | 0.901 |
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