Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCT_1767Cyclase/dehydrase. (151 aa)    
Predicted Functional Partners:
Hmp_1
Hemoglobin-like flavoprotein; Belongs to the globin family.
  
  
 0.782
DmpP
Monooxygenase; Belongs to the globin family.
  
  
 0.682
RMCT_1766
Protein of unknown function.
       0.618
recB
Exonuclease V beta subunit recB; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. [...]
  
     0.525
OphA1_1
Ferredoxin.
  
  
 0.487
Hmp_2
3-ketosteroid 9alpha-hydroxylase component KshB.
  
  
 0.487
OphA1_2
Phthalate 4,5-dioxygenase reductase subunit.
  
  
 0.487
Hmp_3
Ferredoxin.
  
  
 0.487
Hmp_4
Ferredoxin.
  
  
 0.487
RMCT_2320
Oxidoreductase.
  
  
 0.487
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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