Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1768Protein of unknown function. (277 aa)    
Predicted Functional Partners:
RMCT_1769
Transmembrane protein.
 
     0.768
RMCT_1770
Putative uncharacterized protein.
       0.681
RMCT_1330
Hypothetical protein.
  
     0.649
RMCT_0115
Hypothetical protein.
 
     0.646
RMCT_0687
Hypothetical protein.
  
     0.626
Lsr2
LSR2 protein.
  
   
 0.594
RMCT_3821
Protein of unknown function.
  
     0.561
RMCT_1107
Putative uncharacterized protein.
  
     0.532
PcrA_1
ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.528
RMCT_3037
Response regulator.
 
     0.512
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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