Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Csp | RMCT_1771 | RMCT_1772 | RMCT_1771 | Cold shock protein B cspB. | Glutathione S-transferase. | 0.838 |
| Csp | RhlE_1 | RMCT_1772 | RMCT_0534 | Cold shock protein B cspB. | ATP-dependent RNA helicase. | 0.677 |
| Csp | RhlE_2 | RMCT_1772 | RMCT_2342 | Cold shock protein B cspB. | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | 0.685 |
| Csp | TyrC | RMCT_1772 | RMCT_0032 | Cold shock protein B cspB. | Prephenate dehydrogenase. | 0.712 |
| Csp | YccF | RMCT_1772 | RMCT_1773 | Cold shock protein B cspB. | Conserved membrane protein. | 0.727 |
| Csp | deaD | RMCT_1772 | RMCT_1995 | Cold shock protein B cspB. | Cold-shock deaD-box protein A deaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.792 |
| Csp | rplV | RMCT_1772 | RMCT_0444 | Cold shock protein B cspB. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.667 |
| Csp | rpoZ | RMCT_1772 | RMCT_3654 | Cold shock protein B cspB. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.687 |
| Csp | rpsL | RMCT_1772 | RMCT_2916 | Cold shock protein B cspB. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.657 |
| Csp | rpsO | RMCT_1772 | RMCT_4308 | Cold shock protein B cspB. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.699 |
| RMCT_1771 | Csp | RMCT_1771 | RMCT_1772 | Glutathione S-transferase. | Cold shock protein B cspB. | 0.838 |
| RMCT_1771 | YccF | RMCT_1771 | RMCT_1773 | Glutathione S-transferase. | Conserved membrane protein. | 0.622 |
| RhlE_1 | Csp | RMCT_0534 | RMCT_1772 | ATP-dependent RNA helicase. | Cold shock protein B cspB. | 0.677 |
| RhlE_1 | rplV | RMCT_0534 | RMCT_0444 | ATP-dependent RNA helicase. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.598 |
| RhlE_1 | rpoZ | RMCT_0534 | RMCT_3654 | ATP-dependent RNA helicase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.682 |
| RhlE_1 | rpsL | RMCT_0534 | RMCT_2916 | ATP-dependent RNA helicase. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.782 |
| RhlE_1 | rpsO | RMCT_0534 | RMCT_4308 | ATP-dependent RNA helicase. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.769 |
| RhlE_2 | Csp | RMCT_2342 | RMCT_1772 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | Cold shock protein B cspB. | 0.685 |
| RhlE_2 | rplV | RMCT_2342 | RMCT_0444 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.598 |
| RhlE_2 | rpoZ | RMCT_2342 | RMCT_3654 | ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.682 |
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