Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RMCT_1787Cupin domain-containing protein. (114 aa)    
Predicted Functional Partners:
Fgd_4
Luciferase-like protein.
     
 0.618
RMCT_1789
Pyridoxamine 5'-phosphate oxidase-like protein.
  
    0.552
RMCT_3823
Hypothetical protein.
  
     0.520
RMCT_4074
Hypothetical protein.
  
     0.502
PhnF
Transcriptional regulatory protein.
  
  
 0.492
YvoA
Transcriptional regulator.
  
  
 0.492
YurK
UbiC transcription regulator-associated domain-containing protein.
  
  
 0.492
RMCT_1299
Transmembrane protein.
 
     0.474
cobB
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.454
cobB-2
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
    0.454
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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