Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1799Hypothetical protein. (312 aa)    
Predicted Functional Partners:
RMCT_1800
Transcriptional regulator.
 
     0.908
RMCT_0704
Peptidoglycan-binding LysM.
  
     0.615
RMCT_2336
Putative uncharacterized protein.
  
     0.614
RMCT_2942
TetR family transcriptional regulator.
 
     0.565
RMCT_0206
Polyketide cyclase/dehydrase and lipid transport.
  
     0.545
RMCT_1735
Polyketide cyclase / dehydrase and lipid transport.
  
     0.541
RMCT_4075
TetR family transcriptional regulator.
 
     0.523
RMCT_3882
Hypothetical protein.
  
     0.514
TrsA_2
acyl-CoA synthetase.
 
     0.476
RMCT_1804
Acyl-[acyl-carrier-protein] desaturase desA1.
 
     0.447
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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