Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ArtPFamily 3 extracellular solute-binding protein. (287 aa)    
Predicted Functional Partners:
TcyB
Amino acid ABC transporter.
 
 
 0.909
GltK
Amine acid ABC transporter permease.
 
 
 0.773
ArtM_3
Polar amino acid ABC transporter ATPase.
 
 
 0.719
TcyC
Amino acid ABC transporter ATP-binding protein.
 
 
 0.672
RMCT_1830
4-amino-4-deoxychorismate lyase.
  
 
 0.580
IclR_2
IclR family transcriptional regulator.
       0.565
RMCT_1828
Homogentisate 1,2-dioxygenase.
       0.559
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.484
HsaA_4
Oxidoreductase.
  
    0.472
GltB
Ferredoxin-dependent glutamate synthase, large subunit gltB.
  
  
 0.463
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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