Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PolS_4Short chain dehydrogenase. (249 aa)    
Predicted Functional Partners:
RMCT_1947
Dehydrogenase.
 
 0.943
RMCT_0603
Dehydrogenase.
 
 0.936
RMCT_1874
Hypothetical protein.
 
     0.900
RMCT_1875
Gamma-carboxymuconolactone decarboxylase subunit like protein.
 
  
 0.894
GarR_3
Dehydrogenase/reductase.
  
  
 0.875
AldA_5
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.840
KstR_1
TetR family transcriptional regulator.
 
     0.788
RMCT_1882
Cytochrome P450 51.
 
   0.727
RMCT_1884
Hypothetical protein.
 
     0.715
KasA_2
Fatty acid synthase.
  
 0.707
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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