Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
SubB_6Ferredoxin. (92 aa)    
Predicted Functional Partners:
fabG-2
3-ketoacyl-(acyl-carrier-protein) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.855
FadE26
acyl-CoA dehydrogenase fadE26.
 
     0.770
RMCT_1921
acyl-CoA synthetase.
 
     0.757
Fdx_2
Ferredoxin.
  
     0.695
RMCT_1920
acyl-CoA dehydrogenase fadE27.
       0.636
SubB_2
Ferredoxin.
  
     0.535
GalE_3
NAD-dependent epimerase/dehydratase.
       0.521
FabG_28
Short chain dehydrogenase.
  
  
 0.495
Fdx_1
3Fe-4S ferredoxin.
  
     0.494
Sdh_1
Short-chain type oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.481
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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