Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCT_1931DNA-binding protein. (336 aa)    
Predicted Functional Partners:
RMCT_1932
Lipid-transfer protein.
 
 
 0.993
RMCT_1933
Lipid carrier protein or keto acyl-CoA thiolase ltp3.
 
 
 0.989
RMCT_1930
Coenzyme F420-dependent oxidoreductase.
 
   
 0.935
RMCT_1949
MaoC-like dehydratase.
 
 
 0.866
RMCT_2370
Acyl dehydratase.
 
 
 0.857
CaiD_10
enoyl-CoA hydratase.
 
   
 0.844
RMCT_1936
Hypothetical protein.
 
     0.837
Ltp
Lipid-transfer protein.
 
 
 0.835
KshA_8
Rieske (2Fe-2S) domain-containing protein.
 
    0.824
FadA5
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.821
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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