Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1932Lipid-transfer protein. (353 aa)    
Predicted Functional Partners:
RMCT_1931
DNA-binding protein.
 
 
 0.993
CaiD_10
enoyl-CoA hydratase.
 
 0.960
RMCT_1951
acyl-CoA dehydrogenase fadE29.
 
 0.960
RMCT_3980
Putative uncharacterized protein.
  
 0.947
RMCT_1933
Lipid carrier protein or keto acyl-CoA thiolase ltp3.
 
  
0.927
FadJ
3-hydroxyacyl-CoA dehydrogenase.
  
 0.923
RMCT_1950
Nucleic acid-binding protein.
 
 
 0.922
CaiD_11
enoyl-CoA hydratase.
 
 0.912
FadE26
acyl-CoA dehydrogenase fadE26.
 
 0.895
GctB
CoA-transferase subunit beta.
 
 
 0.887
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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