Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HdhA_3Short chain dehydrogenase. (261 aa)    
Predicted Functional Partners:
RMCT_1938
Sulfotransferase family protein.
 
 0.994
RMCT_1940
Hypothetical protein.
 
  
 0.986
KdgR_3
Transcriptional regulator.
 
   
 0.712
KasA_2
Fatty acid synthase.
  
 0.707
fabG-2
3-ketoacyl-(acyl-carrier-protein) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.701
RMCT_1949
MaoC-like dehydratase.
 
 0.638
CaiD_11
enoyl-CoA hydratase.
 
 0.600
KatA
Catalase.
  
 0.599
KatE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.599
RMCT_2370
Acyl dehydratase.
 
 0.582
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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