STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KdgR_3Transcriptional regulator. (313 aa)    
Predicted Functional Partners:
AccA1_1
Urea amidolyase.
  
    0.841
HdhA_3
Short chain dehydrogenase.
 
    0.741
RMCT_1940
Hypothetical protein.
 
     0.730
RMCT_1938
Sulfotransferase family protein.
 
     0.699
RMCT_3566
Putative uncharacterized protein.
  
 
   0.626
RMCT_3415
Putative uncharacterized protein.
  
     0.620
RMCT_2673
Putative uncharacterized protein.
  
     0.608
RMCT_0225
Putative uncharacterized protein.
  
     0.601
RMCT_1873
Transcriptional regulator.
  
   
 0.595
RMCT_1745
Putative uncharacterized protein.
 
     0.542
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.