STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_1975DNA-binding domain-containing protein, AraC-type. (267 aa)    
Predicted Functional Partners:
RMCT_1976
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.825
NylA_2
Amidase.
       0.786
RMCT_2532
AraC family transcriptional regulator.
  
     0.697
PafB_1
Helix-turn-helix, type 11 domain-containing protein.
 
    0.560
YpdC
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.542
Hit_1
HIT family protein.
     
 0.526
RhaR
AraC family transcriptional regulator.
 
 
 0.515
RMCT_1758
Glyoxalase family protein.
 
    0.482
RMCT_3571
Putative uncharacterized protein.
 
    0.470
RMCT_3292
Carboxymuconolactone decarboxylase.
  
 
 0.448
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.