Hit_1 protein (Mycolicibacterium thermoresistibile)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Hit_1

HIT family protein. (143 aa)

Predicted Functional Partners:

lysS

0.677

RMCT_1976

0.657

RhlE_1

0.570

deaD

0.570

RhlE_2

0.570

rpoC

0.535

rpoZ

0.532

RMCT_1975

0.520

RMCT_2524

0.520

RMCT_2356

0.508

Your Current Organism:

Mycolicibacterium thermoresistibile

NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Hit_1	RMCT_1975	RMCT_1977	RMCT_1975	HIT family protein.	DNA-binding domain-containing protein, AraC-type.	0.520
Hit_1	RMCT_1976	RMCT_1977	RMCT_1976	HIT family protein.	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.657
Hit_1	RMCT_2356	RMCT_1977	RMCT_2356	HIT family protein.	Glutaredoxin protein.	0.508
Hit_1	RMCT_2524	RMCT_1977	RMCT_2524	HIT family protein.	DNA/RNA helicase.	0.520
Hit_1	RhlE_1	RMCT_1977	RMCT_0534	HIT family protein.	ATP-dependent RNA helicase.	0.570
Hit_1	RhlE_2	RMCT_1977	RMCT_2342	HIT family protein.	ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family.	0.570
Hit_1	deaD	RMCT_1977	RMCT_1995	HIT family protein.	Cold-shock deaD-box protein A deaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.570
Hit_1	lysS	RMCT_1977	RMCT_3320	HIT family protein.	lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.	0.677
Hit_1	rpoC	RMCT_1977	RMCT_2929	HIT family protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.535
Hit_1	rpoZ	RMCT_1977	RMCT_3654	HIT family protein.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.532
RMCT_1975	Hit_1	RMCT_1975	RMCT_1977	DNA-binding domain-containing protein, AraC-type.	HIT family protein.	0.520
RMCT_1975	RMCT_1976	RMCT_1975	RMCT_1976	DNA-binding domain-containing protein, AraC-type.	Glyoxalase/bleomycin resistance protein/dioxygenase.	0.816
RMCT_1976	Hit_1	RMCT_1976	RMCT_1977	Glyoxalase/bleomycin resistance protein/dioxygenase.	HIT family protein.	0.657
RMCT_1976	RMCT_1975	RMCT_1976	RMCT_1975	Glyoxalase/bleomycin resistance protein/dioxygenase.	DNA-binding domain-containing protein, AraC-type.	0.816
RMCT_2356	Hit_1	RMCT_2356	RMCT_1977	Glutaredoxin protein.	HIT family protein.	0.508
RMCT_2524	Hit_1	RMCT_2524	RMCT_1977	DNA/RNA helicase.	HIT family protein.	0.520
RMCT_2524	rpoC	RMCT_2524	RMCT_2929	DNA/RNA helicase.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.632
RMCT_2524	rpoZ	RMCT_2524	RMCT_3654	DNA/RNA helicase.	DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.649
RhlE_1	Hit_1	RMCT_0534	RMCT_1977	ATP-dependent RNA helicase.	HIT family protein.	0.570
RhlE_1	lysS	RMCT_0534	RMCT_3320	ATP-dependent RNA helicase.	lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.	0.458

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About