Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LimB_6Monooxygenase. (352 aa)    
Predicted Functional Partners:
RMCT_1979
uracil-DNA glycosylase.
       0.795
LuxA_1
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase.
 
  
 0.648
RMCT_1980
Integral membrane transport protein.
     
 0.595
SsuA
Putative uncharacterized protein.
  
  
 0.447
Azo1
NADPH-dependent FMN reductase.
  
 
 0.442
Azr
NADPH-dependent FMN reductase.
  
 
 0.442
LuxA_5
F420-dependent methylene-tetrahydromethanopterin reductase.
 
  
0.431
LimB_3
Limonene monooxygenase.
 
  
0.412
SsuC
Transporter.
  
  
 0.411
LimB_4
Luciferase family protein.
 
  
0.407
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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