Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RMCT_2008Putative uncharacterized protein. (567 aa)    
Predicted Functional Partners:
RMCT_2009
Putative uncharacterized protein.
 
    0.988
RMCT_2344
MmpS3 protein.
  
     0.764
RMCT_0078
Methylase.
 
     0.763
RMCT_0905
Hypothetical protein.
  
     0.759
RMCT_2466
Putative uncharacterized protein.
  
     0.744
PapA1
Putative uncharacterized protein.
  
     0.733
EccE1
Predicted protein.
  
     0.728
RMCT_0578
Putative uncharacterized protein.
  
     0.723
EccD1
Transmembrane protein.
  
     0.710
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.695
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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