Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RpoE_1RNA polymerase factor sigma-70; Belongs to the sigma-70 factor family. ECF subfamily. (332 aa)    
Predicted Functional Partners:
RMCT_2035
Secreted protein.
  
  
 0.606
YtpA
Lysophospholipase.
  
  
 0.606
RMCT_2034
Protein of unknown function.
       0.582
RMCT_2033
Hypothetical protein.
       0.578
RMCT_2032
O-methyltransferase.
       0.573
RMCT_2330
Anti-sigma factor.
  
 
 0.562
SigE
ECF subfamily RNA polymerase sigma-24 subunit; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.520
RMCT_2837
RNA polymerase sigma-70 factor.
  
 
 0.518
RMCT_4472
Putative uncharacterized protein.
  
  
 0.477
RMCT_1150
Protein of unknown function.
 
 
 
 0.457
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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