Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CysM | CysO | RMCT_2195 | RMCT_2194 | Cysteine synthase B cysM. | 9.5 kda culture filtrate antigen cfp10a. | 0.999 |
CysM | Mec | RMCT_2195 | RMCT_2193 | Cysteine synthase B cysM. | Mov34/MPN/PAD-1 family protein. | 0.986 |
CysM | PncB | RMCT_2195 | RMCT_2189 | Cysteine synthase B cysM. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.613 |
CysM | RMCT_2191 | RMCT_2195 | RMCT_2191 | Cysteine synthase B cysM. | Protein of unknown function. | 0.845 |
CysM | RMCT_2192 | RMCT_2195 | RMCT_2192 | Cysteine synthase B cysM. | Hydrolase. | 0.795 |
CysM | RMCT_2196 | RMCT_2195 | RMCT_2196 | Cysteine synthase B cysM. | Membrane protein. | 0.945 |
CysM | Rbn_3 | RMCT_2195 | RMCT_2198 | Cysteine synthase B cysM. | Beta-lactamase-like protein. | 0.589 |
CysM | clpS | RMCT_2195 | RMCT_2190 | Cysteine synthase B cysM. | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.793 |
CysM | murI | RMCT_2195 | RMCT_2197 | Cysteine synthase B cysM. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.964 |
CysM | rph | RMCT_2195 | RMCT_2199 | Cysteine synthase B cysM. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.487 |
CysO | CysM | RMCT_2194 | RMCT_2195 | 9.5 kda culture filtrate antigen cfp10a. | Cysteine synthase B cysM. | 0.999 |
CysO | Mec | RMCT_2194 | RMCT_2193 | 9.5 kda culture filtrate antigen cfp10a. | Mov34/MPN/PAD-1 family protein. | 0.989 |
CysO | PncB | RMCT_2194 | RMCT_2189 | 9.5 kda culture filtrate antigen cfp10a. | Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family. | 0.697 |
CysO | RMCT_2191 | RMCT_2194 | RMCT_2191 | 9.5 kda culture filtrate antigen cfp10a. | Protein of unknown function. | 0.795 |
CysO | RMCT_2192 | RMCT_2194 | RMCT_2192 | 9.5 kda culture filtrate antigen cfp10a. | Hydrolase. | 0.795 |
CysO | RMCT_2196 | RMCT_2194 | RMCT_2196 | 9.5 kda culture filtrate antigen cfp10a. | Membrane protein. | 0.883 |
CysO | Rbn_3 | RMCT_2194 | RMCT_2198 | 9.5 kda culture filtrate antigen cfp10a. | Beta-lactamase-like protein. | 0.589 |
CysO | clpS | RMCT_2194 | RMCT_2190 | 9.5 kda culture filtrate antigen cfp10a. | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.806 |
CysO | murI | RMCT_2194 | RMCT_2197 | 9.5 kda culture filtrate antigen cfp10a. | Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. | 0.883 |
CysO | rph | RMCT_2194 | RMCT_2199 | 9.5 kda culture filtrate antigen cfp10a. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.461 |
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