Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CysM | CysO | RMCT_2195 | RMCT_2194 | Cysteine synthase B cysM. | 9.5 kda culture filtrate antigen cfp10a. | 0.999 |
| CysM | Mec | RMCT_2195 | RMCT_2193 | Cysteine synthase B cysM. | Mov34/MPN/PAD-1 family protein. | 0.986 |
| CysO | CysM | RMCT_2194 | RMCT_2195 | 9.5 kda culture filtrate antigen cfp10a. | Cysteine synthase B cysM. | 0.999 |
| CysO | Mec | RMCT_2194 | RMCT_2193 | 9.5 kda culture filtrate antigen cfp10a. | Mov34/MPN/PAD-1 family protein. | 0.989 |
| Mec | CysM | RMCT_2193 | RMCT_2195 | Mov34/MPN/PAD-1 family protein. | Cysteine synthase B cysM. | 0.986 |
| Mec | CysO | RMCT_2193 | RMCT_2194 | Mov34/MPN/PAD-1 family protein. | 9.5 kda culture filtrate antigen cfp10a. | 0.989 |
| Mec | arc | RMCT_2193 | RMCT_4326 | Mov34/MPN/PAD-1 family protein. | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.988 |
| Mec | glpK | RMCT_2193 | RMCT_0079 | Mov34/MPN/PAD-1 family protein. | Glycerol kinase GlpK; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.982 |
| Mec | rpsB | RMCT_2193 | RMCT_4232 | Mov34/MPN/PAD-1 family protein. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.941 |
| Mec | rpsC | RMCT_2193 | RMCT_0445 | Mov34/MPN/PAD-1 family protein. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.948 |
| Mec | rpsE | RMCT_2193 | RMCT_0500 | Mov34/MPN/PAD-1 family protein. | 30S ribosomal protein S5 rpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.937 |
| Mec | rpsO | RMCT_2193 | RMCT_4308 | Mov34/MPN/PAD-1 family protein. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.936 |
| Mec | rpsQ | RMCT_2193 | RMCT_0448 | Mov34/MPN/PAD-1 family protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.936 |
| Mec | rpsS | RMCT_2193 | RMCT_0443 | Mov34/MPN/PAD-1 family protein. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.944 |
| arc | Mec | RMCT_4326 | RMCT_2193 | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | Mov34/MPN/PAD-1 family protein. | 0.988 |
| arc | glpK | RMCT_4326 | RMCT_0079 | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | Glycerol kinase GlpK; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.986 |
| arc | rpsB | RMCT_4326 | RMCT_4232 | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.412 |
| arc | rpsC | RMCT_4326 | RMCT_0445 | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.576 |
| arc | rpsE | RMCT_4326 | RMCT_0500 | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 30S ribosomal protein S5 rpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.540 |
| arc | rpsO | RMCT_4326 | RMCT_4308 | ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.415 |
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