Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RMCT_2202Integral membrane protein. (115 aa)    
Predicted Functional Partners:
RMCT_2203
Lipoprotein lprD.
       0.868
YcnJ
Copper resistance protein CopC.
  
    0.777
RMCT_3818
Transcriptional regulator, CdaR.
  
     0.614
QcrC
Ubiquinol-cytochrome C reductase qcrC.
 
   
 0.596
CtaF
Integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
 
     0.546
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
 0.543
RMCT_3846
RDD domain-containing protein.
 
     0.524
YebZ
Copper resistance D.
  
     0.522
RMCT_2651
TetR family transcriptional regulator.
 
   
 0.498
FabD
Malonyl CoA-acyl carrier protein transacylase fabD.
 
    0.493
Your Current Organism:
Mycolicibacterium thermoresistibile
NCBI taxonomy Id: 1797
Other names: ATCC 19527, CCUG 28008, CCUG 41353, CIP 105390, DSM 44167, JCM 6362, M. thermoresistibile, Mycobacterium thermoresistibile, NCTC 10409
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